Scaffold Ga0187218_1008085

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0187218_1008085

Scaffold Ga0187218_1008085

Overview

Basic Information
Taxon OID	3300017737 Open in IMG/M
Scaffold ID	Ga0187218_1008085 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11 (version 2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2882
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011629	Metagenome / Metatranscriptome	289	N
F047991	Metagenome	149	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187218_10080852	F047991	GAGG	MQTQNLVATNNSFSCLHTQDVLKQFKKRHKFAKQQTLSKHVTCTSIYTDDADICFTFNVVHNNTTYVVDVYANYNNNFVSGNLYNCTCNTLATQILQQHFNLKANYTQLYDDGMYYNAK
Ga0187218_10080858	F011629	GAGG	MLNTQEVKDLIRTRFGGSLKQAYLNKCYSNKKEIADKRNMAFAVDGDVYTNVDLVALAKEIGCKRIKLHAAFLRGMQSGSWLRLQQVHYNK

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