| Basic Information | |
|---|---|
| Taxon OID | 3300017736 Open in IMG/M |
| Scaffold ID | Ga0181365_1016716 Open in IMG/M |
| Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.N |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1843 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus → unclassified Prasinovirus → Yellowstone lake phycodnavirus 2 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Michigan | |||||||
| Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | 108 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011918 | Metagenome / Metatranscriptome | 285 | Y |
| F031024 | Metagenome / Metatranscriptome | 183 | N |
| F058800 | Metagenome | 134 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181365_10167161 | F031024 | AGGAGG | MKQALVTQSFGEDWQKIIDLTRPRMEAYCKRHDTDFILIDKPLTHPAQYSKSAIGNIMATKGYDQVTFVDADVLIAADCPKLSDNAGVFCAFDEGAYLDRKPDMVKLAGAFGGIIEPK |
| Ga0181365_10167162 | F058800 | AGGA | MKQALSRLFYFLGDTISRTLLRAGIGYGLYKTFMLWSIELDEKFDVWKEVKQKRRRKK |
| Ga0181365_10167167 | F011918 | N/A | TDCAQLWAYRAASENPKCACVSVVLASNDATKLTTKVWDEDELYQAGIAFCAMQKVWAWVKNYTPPGMKL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |