NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181431_1006877

Scaffold Ga0181431_1006877


Overview

Basic Information
Taxon OID3300017735 Open in IMG/M
Scaffold IDGa0181431_1006877 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 54 SPOT_SRF_2014-05-21
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2792
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004523Metagenome434Y
F005491Metagenome / Metatranscriptome399Y
F022645Metagenome213Y
F039092Metagenome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0181431_10068772F005491N/AMSAFYKDTRFEGKLVRLEDVIDEIYDRALETIDESLYELLNNKDDDEFYEDYKEAFPLIVEKLQKFHDGED
Ga0181431_10068773F004523N/AMEYLSTEIRSAREAMTIFKILGIKDVTTDRQRNNGTIVYELPISQVWQTLNPKPLRFATYKAGYVRNVTEGLASPYQINKTKKVSTRTSGYAYDTIERILIHDWEERIIYLAKFIIKNYYQKPTYIMSDYVMKCLREAYVRDYNNQPSNRLPFGDKVSFDEGDMHSPDIKVIINGHRYNL
Ga0181431_10068774F022645N/AMKDTNEIENQLKHKADKYIEQKAKEMFEIHREIAMYLGVKLPNYIDYITDFSDYSKDLVANRGKYFTSSSPSAMQLKYQKDLAKNYKEKLVAKYTRELIMKLDIFE
Ga0181431_10068778F039092GAGMVVTLPSLKTYTINTVNNMTITIKQIGKTYSVDSEDKVTVTHNHDSIISVCGEYFKNKHTNEWLSELEVEQVMCSRYEEDESNKYY
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