NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181419_1004221

Scaffold Ga0181419_1004221


Overview

Basic Information
Taxon OID3300017728 Open in IMG/M
Scaffold IDGa0181419_1004221 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 42 SPOT_SRF_2013-04-24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4549
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009444Metagenome / Metatranscriptome318Y
F087310Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0181419_10042216F087310N/AMIAVCVSGISSFIPEYEKVIELQRKVFGEYDFFFQQWEGYPEPNVPNCLYTPEPTWDYHCMSDVKVKPDCNIFRRYTDKPNGKMYRKPKLFEQFKHSANQQVAHYHLVESLPEKYTTIIRLRFDTLVSTKVDFNPYLELSKQGWVIGFNTGQAPGGNPTPIHKLEEQSHDAPGCPWRIWDHIQFHPRDRFKDVEKLKNNHELNGSEWGWYQIFVHQSGNKKYKNVFGGESITKWTQQPLQWDKF
Ga0181419_10042217F009444N/ANHTRKEVESTKIETTANEVVASHLIGATTISVGYGEIEDGNKYTTVGAEKKIGESFSLYGAFQQTDVPTGVDTQDAAAGIKFTF
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