NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181401_1025766

Scaffold Ga0181401_1025766


Overview

Basic Information
Taxon OID3300017727 Open in IMG/M
Scaffold IDGa0181401_1025766 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 24 SPOT_SRF_2011-07-20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1720
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010828Metagenome298N
F058891Metagenome / Metatranscriptome134N
F101003Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0181401_10257662F010828N/AVKQQAAIDLLADEELHELAEKLCNCPDDLIQEVAMVLLEMTEEKWQQINEGGYLRFYVVRTMMTMATSPRSSFSKLYDLHNHKKVDHEREDYDWEKEEDISLIETLMQELHWYDREVLKLWLEEGSYRKVAKKVDIPYKSIGNTVKKTIETLRANYYGIHLERIIRERVKLPLD
Ga0181401_10257663F101003GAGMEYILSALSASVLSYLWIEVFGIDLLLKKWLGMDESQSFKPLDCRLCLSFWFGVLYCANDPEALLYIPLLSVFFERLMWRFEI
Ga0181401_10257664F058891AGGMDKKSVLLFIKERHEALTKMKAAKFSGRITREEQKLYQEAWSYIDPKAKVCFTCGRSPQIMSVALLNYYEANKPKRRKKK
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