NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0181401_1016619

Scaffold Ga0181401_1016619


Overview

Basic Information
Taxon OID3300017727 Open in IMG/M
Scaffold IDGa0181401_1016619 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 24 SPOT_SRF_2011-07-20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2246
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011356Metagenome292Y
F027806Metagenome / Metatranscriptome193N
F060450Metagenome / Metatranscriptome133N

Sequences

Protein IDFamilyRBSSequence
Ga0181401_10166191F011356N/AMSEVEEIVEDPDRIPQPGDWDYAPTLDDIVRAALVEGQSIFCETEAVSDFIKLTVPELICSYDATDFMIYDLLLFSYGYINRKPMKDGATEYWINLN
Ga0181401_10166193F027806N/AMSYTQEALNCKYVFANLKTSPITAASIVVPLPNGLERAPNVMISLEACKLLTDTETSGLVVKMEEAPFNYYSADNRGCALGIVDINYRQVGDAFFHYALDHDINPAYNIASNTRTITLFLETTAGDAFSFQNLSSYSFIFKLEYPPQPPAGIVNEFAAEIHRGL
Ga0181401_10166194F060450N/AMRPDKLKKISNPAEVKRKFNSASYNGSLAISDRADKKYVYTSDKSGKKIHFGSTMADYTHHKDKKRLDNFKSRNAAWKSAPKESAAHLSYHLLW
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.