NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181383_1037564

Scaffold Ga0181383_1037564


Overview

Basic Information
Taxon OID3300017720 Open in IMG/M
Scaffold IDGa0181383_1037564 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1303
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004523Metagenome434Y
F005491Metagenome / Metatranscriptome399Y
F021776Metagenome / Metatranscriptome217Y

Sequences

Protein IDFamilyRBSSequence
Ga0181383_10375642F004523N/AMEYLSTEIRSAREAMTVFKILGIKDVSTKRQQKNGTQVFELPIQQMYQSLIPKPLRFATYKAGYVRNVSEYNSSPYQINKTKKVSTRTSGYAYDTIERILIHSWEDRLIYLAKFIIKNYYKKPTYIINEYTIKCLREAYYEYNKTGLPWGDSVDQYGLPYISKATLDECDIQVIINGHRYNL
Ga0181383_10375643F005491N/AMSAFYKDTRFNGKLVRLEDVIEETTERAIQVIDDSLYELLDDSDSDEFYIDYKEALDFIVKNLQEFNNITK
Ga0181383_10375644F021776N/AMNKEELEVKISTLQTLVTQKNEELAQYAADIERLNDELKDLNKPKLTGLQLDELYQAIEQGIESFDFDDQDNYETDFHIDYDNRIAVESLNFHNADELLRVIYNEARELFAEIKE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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