NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181390_1017904

Scaffold Ga0181390_1017904


Overview

Basic Information
Taxon OID3300017719 Open in IMG/M
Scaffold IDGa0181390_1017904 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2356
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006939Metagenome / Metatranscriptome361N
F033796Metagenome / Metatranscriptome176N
F036783Metagenome / Metatranscriptome169N
F059965Metagenome / Metatranscriptome133N

Sequences

Protein IDFamilyRBSSequence
Ga0181390_10179043F059965GAGGMPLPPSMEMELIELGILKSDTEELESIAEQTGFYALRAETIAWHNTLIVDGEVMF
Ga0181390_10179045F006939AGGAGGMPLPLNMVTNVLSENQNKFITVKFLTKDNEERTYTGRMNVIKGLKGNERGQIAAEALRKAGYITLKTKQGYKCFNVDRVLGFVAGGRRIFGLGNEV
Ga0181390_10179046F033796AGGAMSSNDENKTYKVAGVHSGKKGVTVLEGNKRVLEEAEQSAKLLTGKYALENSLGITNFVAFNTHALTMLPPYSIDMEAEWNYVVEQEGDDTPSVEINRQIGGSI
Ga0181390_10179048F036783AGGAGMEIVRQKYGSHVDTRVYIDLGYGEMEIDVEDIEMVDGELSAMAYCPQREIELYADHKDCERALAKFEKENSNEWG
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