NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181350_1013825

Scaffold Ga0181350_1013825


Overview

Basic Information
Taxon OID3300017716 Open in IMG/M
Scaffold IDGa0181350_1013825 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.DCM.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2290
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)36
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005702Metagenome392Y
F005846Metagenome388Y
F037027Metagenome168N

Sequences

Protein IDFamilyRBSSequence
Ga0181350_10138251F037027N/ARAIRKGAGDEEQASSLQKDWDCGEEFIREFFKFGDERVFLRGNHDERIFDMARNSRSGLARDYANDGIANIEAIMKETKAKMFPYDSVGGIYKCGNLSFVHGYGHAMHSAKQHADAYGDVIFGHTHAIDYFRSVSIDPRTGYNIGCLCNKTPEYNRGQLRRLRWQHGWAFGAIYPDKTHEVFQARQRGNKFYLPTDIKAF
Ga0181350_10138253F005846N/AMTSFPLPARPQASAVPAWHIEFKKVTAIEGKENGWRGLFDQETKQGYNRHGKFASNHNLMAERILGAGIKSRFVDCEIMGQRTKTGKGTIVVMDAFDPSNPKPYAERMKEIEHLEAVTFDIPNNKLLRFVRLAHHKINAIWEEMNFQNNKAGEVIWEGFVMKAMDDGKYPFITNPNYCSPAWQKQRIRW
Ga0181350_10138254F005702GAGGVIFGLVVFIGLFILQGLRLLGKHIDQQNYERRKFYLFVAAELDKMDKIVAEGNQPKELKQPELVLPSKNWAGRN
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