NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181412_1011778

Scaffold Ga0181412_1011778


Overview

Basic Information
Taxon OID3300017714 Open in IMG/M
Scaffold IDGa0181412_1011778 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2618
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050478Metagenome145N
F067110Metagenome / Metatranscriptome126N
F095342Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0181412_10117782F050478GAGGMKIKRVSRYTFDKDGHPINKRGKRLTNKITATFKQSPYNAGARVNWIHFEKEEVVKXV
Ga0181412_10117784F095342AGGAGMNKTEMIENIETIIKANKDNDNCSVFWLADMIKEIVDSPDLKETEDEDV
Ga0181412_10117785F067110AGGAGMKGLLQTIVGEAVKRGYYYGIDCGEGYEFTSEYFFQHPTQDLDLLCNQKPEDEYIGLDNLDEGHIFFFTKEQADRLNNAVGKVKFDHEIWKSEEEEDNGDYYEGWILWSNWNDGVERVCDYTTNLDNLIGLRETTDKWEEMVTEFTNKL
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