NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181412_1000018

Scaffold Ga0181412_1000018


Overview

Basic Information
Taxon OID3300017714 Open in IMG/M
Scaffold IDGa0181412_1000018 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)60182
Total Scaffold Genes87 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)74 (85.06%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009293Metagenome / Metatranscriptome320Y
F051150Metagenome / Metatranscriptome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0181412_100001819F051150AGGAGMFAIVDFNRKTTKFFNSFQAASDAIAAYPVQQNVVVIDLSEGHVQAELL
Ga0181412_100001841F009293AGGMTRIAYDSIAKEEFKVFVFDYQTDNISDNDKLYRAFESGWPVVIKNMNIPGVDYEYYDSLPDWTIKDNKWIMPWYNSHIKKRERLRTERGWTEDEIDIFHKKHKKANEGWNQIFDELFPRYETTERMLSHRYNTLVENKLHLDELDEQHTGHEQQIRMFVQLDKKRPRVLTFGPDLEQMYHKYYRDFDLQNIDKDDVHKFITEMRNRCVWNDEMWDQFHHPLHYITFNPGDIWFFNAQWITHQIVFGTKLQCFEADILNKSLIDPELCMAERIRGL
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