NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181391_1042590

Scaffold Ga0181391_1042590


Overview

Basic Information
Taxon OID3300017713 Open in IMG/M
Scaffold IDGa0181391_1042590 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1086
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004235Metagenome / Metatranscriptome447Y
F020386Metagenome / Metatranscriptome224Y
F099434Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0181391_10425901F004235N/AALIGEQDFIGKAITMINVNWDVDADASREAMEAVSNTVLSRATILAAGAVYDTGTKQDFLLEGDFTSTINSFKSLDGTVTGTLAQVLVEDIINLGTVDSINFGSGTVAVTIKTTFKYA
Ga0181391_10425902F020386AGGAMPISRNNFTSLPVAAEQEGVDVSYFTVDFINAMNSETGDPQADSTAAGLALVEQAIMNQGINILATGPLGNSNTELTYMVRADSLDVANHITANGLRDAIRAVDTAGRAASATPRNTANFSAATVTAKTLAIAV
Ga0181391_10425903F099434AGGAGGMPATKNNFVHGTNMELEGVATSTFVVDFVNAMTAETSDLSSGSATAGLEATRAVISRYINILSEGPLHESDKQKTYTVRTDSLGTLI
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