NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181391_1010460

Scaffold Ga0181391_1010460


Overview

Basic Information
Taxon OID3300017713 Open in IMG/M
Scaffold IDGa0181391_1010460 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2392
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007985Metagenome / Metatranscriptome341Y
F010695Metagenome / Metatranscriptome300Y

Sequences

Protein IDFamilyRBSSequence
Ga0181391_10104602F010695GGAGMQNLNTKNQSPEKIHTIPGYSIGSFTCYNADAPAGEGVNIQLTALEEMWYGHEENIDHPVGSEYPVSINVPHMKVMRDRVIASVLNRTGIDIRDYDSIIHATTSPGRDENGNILDYAGNNIIRNV
Ga0181391_10104605F007985AGGAMQQQYKVNNKVFNNITEASAYVTTLNKAVTIQPYTPPTKASIKLTVVRNMLIREMLNWAGSFTQSMSPSTDVDWMYSVEDDTGFSDAGDTWYEDLGNVSFGSNLEWEDAKEDYESAVSNFDSLLCTYDNYTTVDSLSEMLNTMYHTMSDHSSETDSYIGEIRHSIKQFCEGNSNIAHSYDHPRRRTTISFVGNVDKMYKAYMLERNS
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