NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181391_1002034

Scaffold Ga0181391_1002034


Overview

Basic Information
Taxon OID3300017713 Open in IMG/M
Scaffold IDGa0181391_1002034 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5786
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (29.41%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019754Metagenome228Y
F020110Metagenome226N
F022313Metagenome215Y
F023484Metagenome210N
F044802Metagenome154Y
F098218Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0181391_100203411F020110N/AMSTQLEVKARLSYARAMLERDIPTNTVATLISSKFFVCRSTAYNDIQAAQAEIDLSDDGPSFEEASEPINTDSVLAMLQHRLEVCVATGDDKAVCSLIKAMNQAKQWNGYRTQSASPFA
Ga0181391_100203412F023484N/AMKINTKTGELLIASLGRYTSKTEKIIFFKTRAGSMVSSYYVSTFNSIKEGDGLMLSNEWGRDQALDADQVAKCKTFIRNHS
Ga0181391_100203413F022313N/AMTYHYQPQQEYELDKLERILKELQSVIEREKKRHMMDEHLTHSMRDLLEYEIIPLLEAEVYYDPTPQY
Ga0181391_100203415F098218GAGGMTSFSSWSKRPEDMRAAAKTRAIAALHQKHSKGLTTLERAYLHALKTGRLDIDD
Ga0181391_10020346F019754N/AMNHDLNDLIPSEYEPEWPPSEADIQDMFEAGEIDAYDREKALDELIAQELWRESLPCSVPSPQELNSGLK
Ga0181391_10020347F044802AGGAMTNEPTSTALYRAQEDLRMLETCPTWYDHLDKVEAAIAEEDRVYDIRVAAGWELDEGGWSAPSPETGEMIPEWNWLDHGLVYPEDAK
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