Scaffold Ga0181403_1000011

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181403_1000011

Scaffold Ga0181403_1000011

Overview

Basic Information
Taxon OID	3300017710 Open in IMG/M
Scaffold ID	Ga0181403_1000011 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	42335
Total Scaffold Genes	71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	58 (81.69%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000256	Metagenome / Metatranscriptome	1448	Y
F037633	Metagenome	167	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181403_100001159	F000256	AGG	MADGLSGIGSMPFNVGSHIHEQTRAREAIETHLAEQRVEKEHRANHSHLEALAKQTLDLQQSYDRFGRKTTADRPQGTKLNIEV
Ga0181403_100001160	F037633	N/A	MIDPFTALAAVKSAVAAGKELVNVTKQIGEFFDGVDDLRAAHEKKKNSLFSGSDENAMETFVNLQRAKDAEEELRQIVIATRGFSAWGELQAIRVQARKDRKAKAEAERKRKAKMVERIVIYGGATIIVTIMLGITIVIILAKQGRI

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