NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181387_1014616

Scaffold Ga0181387_1014616


Overview

Basic Information
Taxon OID3300017709 Open in IMG/M
Scaffold IDGa0181387_1014616 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 10 SPOT_SRF_2010-04-27
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1518
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004520Metagenome / Metatranscriptome434Y
F005351Metagenome / Metatranscriptome403Y
F050305Metagenome145Y
F086293Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0181387_10146162F005351N/AMYNPNNPSNWSWSKAFDEMEKTVNQAELTQQIINHLHNYDGGEKEFNQLDKENQEEMYNILTQIL
Ga0181387_10146163F050305N/AMNNLNTTIDKVAMSEFDMHYYQLGDNEKQWCHDEMVNNKKWLKKEWKDPLWSVAEKWKAGLPIYKTYINE
Ga0181387_10146164F086293N/AMNKIIIITSVITSGLLGYNAKKDGTRVEYALENVQYIKSWVHEDINNGVLDSSYAEYYLESLNQTEDLLIEELTN
Ga0181387_10146167F004520N/AMKLTNEEKDEITLKVVDSLYEKLANELEYELQEHEKFPETNDAYMNLFNEMTIKIVKYMRSELFSPGTSEDLELYKR

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