| Basic Information | |
|---|---|
| Taxon OID | 3300017709 Open in IMG/M |
| Scaffold ID | Ga0181387_1000315 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 10 SPOT_SRF_2010-04-27 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 11378 |
| Total Scaffold Genes | 25 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 23 (92.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 33.55 | Long. (o) | -118.4 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003769 | Metagenome / Metatranscriptome | 469 | Y |
| F005578 | Metagenome / Metatranscriptome | 396 | Y |
| F011629 | Metagenome / Metatranscriptome | 289 | N |
| F047991 | Metagenome | 149 | N |
| F052534 | Metagenome | 142 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181387_10003152 | F005578 | GGAGG | MQKNISTRELKHLCNFLTHTMNYKVELVTDEDFACDEHGGANIYDWVAATEELCMRTQCVLDNYFTHKDETLATAFETAIDYRYDDDCINEGISEHFFDYCKKHGILDFYFKQEDAHDYDGADAHMRM |
| Ga0181387_10003153 | F011629 | GAGG | MLNTTQVKDLIRTRFGGSLTQAYLNKCYSNKKEIADKRNMAFAVDGDVYKGVDLTALAKEIGCKRIRLHTAFLRGMQSGAWLRLQHVYYNK |
| Ga0181387_10003156 | F052534 | GAGG | MLTQKALTRNLIATLCTTTNTLFVHNKKTVNKAAFVYTQNAQKVVRNLNAQQQAAFNNLPATYMQSAKKFVTNALAQSTILKS |
| Ga0181387_10003157 | F003769 | AGGGGG | MQQLKTITKTTTTKTKSVHVNTLYTIIENCFNNLQVLESDCTASNYFCASANIFAQLQVLYANTAYNNDYVSLESLMEVFANNITYYDESNMYYSVVENTALQKVKLENYASLSN |
| Ga0181387_10003159 | F047991 | AGGGGG | MQAQNLVATNNSFSCVHTQNVLKQFKKRHKFAKQQQLSKHVTCTSIYTDDVDVCFMFNVVHNNATYVVDVYANYNNNYVSGNVYNCSCTKLATQILKQHFNLKVFFTESYICTSTNAAEIYYNAK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |