NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181369_1000530

Scaffold Ga0181369_1000530


Overview

Basic Information
Taxon OID3300017708 Open in IMG/M
Scaffold IDGa0181369_1000530 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10800
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-20.099Long. (o)-70.892Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006848Metagenome / Metatranscriptome363N
F013089Metagenome274N
F023580Metagenome209N

Sequences

Protein IDFamilyRBSSequence
Ga0181369_100053013F023580AGGMNNIKIFLVRNYGSTLGAAETLDVTPNTVRNWCGRSPRNILKHLPEISQTCGATYAEIVEEVLLCEKEGIQ
Ga0181369_100053015F013089N/AMGQSKIKTIQPNGTYDSQNGLMYKFEIELESGESGEVSAKSENRWSVGDEVEFEVTPSKWGDKMRLSKPGFNSNQSKANNPDIQKRIDASWAIGHAINQESDPEKILEAAEFLLSIRSTLISKL
Ga0181369_10005302F006848N/AMMELKLPHRWSDLSLGELQVMMTADNPLEKISICSGYSVEKLRAMPQKLIEAASAHLDNLLTQETARHEKVVEMDGKRFGFIPNWDEFTAGEWIDMENHLEDFWANAHKITALLYREVTYELGDKYEIKKYTAKEDASIFEEMPADLISGMLLFFWTSRNQLLHDMQFSLLEVADKAIQSVKNGDGITSSTPSQGKTFSRWTRLRNSLSKSYSNTSAI
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