NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181363_1017873

Scaffold Ga0181363_1017873


Overview

Basic Information
Taxon OID3300017707 Open in IMG/M
Scaffold IDGa0181363_1017873 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.ND.MLB.S.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1407
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002687Metagenome / Metatranscriptome536Y
F004786Metagenome / Metatranscriptome423Y
F007571Metagenome / Metatranscriptome348Y

Sequences

Protein IDFamilyRBSSequence
Ga0181363_10178731F007571N/AAQKTDAYAATIAADGAGASSGTSIYKAIADGIGDSYNVMRFTPNRLLVAPSGGQNDIDFAGLLGAVDGSQRPLFAAAAPQNAGGLISQGSTAGTVAGLSLVVDPNYTGNDAGAKYGLVYPSAAMRFHESGTIELRANLVANGRIEIGLYGYVAVVNRFPTAFRYLTVA
Ga0181363_10178733F002687GGAVLADNLGQYTFSQSITNADILEANVIPSGVAALSGGSTYVGNAAVQSAVYTVSVEVFQARLAGGGQIEGVDFTATPFRMGRSLFNKCVGLLGSYMDTESMCQ
Ga0181363_10178734F004786N/AMPNETILQQIRTPLATALSSVAGNVYSFVPETVIPPAVVVVPDSPYLEFETISKTNIRAKINFTITVAVAYNSNPASLDNIEQLII
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