NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181363_1001152

Scaffold Ga0181363_1001152


Overview

Basic Information
Taxon OID3300017707 Open in IMG/M
Scaffold IDGa0181363_1001152 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.ND.MLB.S.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6458
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (29.41%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000922Metagenome833Y
F001964Metagenome610Y
F002227Metagenome580Y
F058816Metagenome / Metatranscriptome134N

Sequences

Protein IDFamilyRBSSequence
Ga0181363_10011521F058816N/AMSCPNVFNAFAVATESLAQDVYKRASYRSMWLNLIERGEYPQGTGLTQTSFTTTSIEPTAAEEWSAITLASGNPGDNGGACDVTYNDVPVGYNAVTWGPERFALKGPLLCKDDLTFDHRVEAF
Ga0181363_100115214F002227N/AMKLTIQSKTNAQTIIDLFNAIINGEVQEHGAQPLSIYDDDKHICSIVAANGQQILELIIEREQGDKLMQIGEPETLQ
Ga0181363_100115216F001964GGAGGMSRNLFAPPKFKVQVSGAIGWSDLKQRVVRHETVEFRTRKEAEAAAKELNPGEYTQGRLRVVPVEMPEDYDVYPVTERTKANR
Ga0181363_10011523F000922AGGMRIGKQAWEKAKALYFAGQSWDAIANDLQLNKATLTNKASIEGITKVKREAKAISPKKETSLESLSALVRSKLAADAASTLERIDSYDLDGIKDESVREQILGSVAKRSALVFGWSEQGEQASVSINLLGSMPDKFHVEQVVSEPSEK
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