Scaffold Ga0181363

Basic Information
Taxon OID	3300017707 Open in IMG/M
Scaffold ID	Ga0181363_1000697 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MLB.S.N
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300017707 Open in IMG/M

Scaffold ID

Ga0181363_1000697 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MLB.S.N

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8732
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (18.18%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

8732

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (18.18%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	43.2382	Long. (^o)	-86.2805	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

43.2382

Long. (^o)

-86.2805

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F024730	Metagenome / Metatranscriptome	204	Y
F030677	Metagenome	184	Y
F104546	Metagenome	100	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0181363_10006971	F104546	N/A	MNLLSTILDRLNQRIEAGNIFDQIYGLSELVGEGNDRAWAHYIGNGQAIPVTNFDAKQGTLFWAKRGKITVAKNESLRLAGCKSIYETRFSMTAYAMVRKSHLPCDSADAQDWIASRVLRLISGTDPQFKTAIGVVAYEVVPSGYLNEIRYLPVNYEWAAVAIDVDVNVSTTSEDGCYDTCATGDIPLPDFEPCVPCLTEVAVDGVTITGNGTEADPLTAIG
Ga0181363_10006972	F030677	N/A	MAASPDDVKKNLDILLEGWASKFTPLYGPVRELKRIMFKRIFGTGSKGGTNTAGSKLPTEPYSTKPIYVSPRSLANAPSKYKIGKRGEPIKSLYFSGGYAELKSGTSRKLPLELTGRLKAGFLNEDVFTEGLTAGILLPESEQKKKQGLEAKYGPIFLPTKEEQDEMLQDHAQQIIEQIINAMKKG
Ga0181363_10006973	F024730	GGA	VLPFLFIFVKNSNMCIESLLGLRGCGTAEPSTGLYIDDLGINTTFLGQLITDQYDQGLELFEAKREFAWRKLSSDVLTRLSPMMKSDTVIEGKRVGMVLTNYSNVQTALGAGNYGGIRLKIDPNNLAYLNFYLADINLAIASTNTNVPVLIFDMTTGKLIDTITYLTGGLDQYLGKTFASARRKLDIAIVYEMSMNAPKFITKKGSCLSCGGGIRESHICPFVDAVGIELTTDGTNVLTSANSKYTAGMSVNYNVNCDRQGWLCSIGGLMALPLAYATAVEIYNYALTVSPNQRVNTAVVVNRGQNKTELQEGLMAARDIAATRYGEELGAMLQNMRLPDDAHCWDCRKNIKYVTALP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181363_1000697

Overview

Ecosystem & Geography

Associated Families

Sequences