NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181377_1022082

Scaffold Ga0181377_1022082


Overview

Basic Information
Taxon OID3300017706 Open in IMG/M
Scaffold IDGa0181377_1022082 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1384
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-29.499Long. (o)-71.609Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019754Metagenome228Y
F020110Metagenome226N
F022313Metagenome215Y
F023484Metagenome210N

Sequences

Protein IDFamilyRBSSequence
Ga0181377_10220821F022313N/AMTYHYQPQQEYELTKLERILKELESIIEREKKRHMMDEHLTHSMRDLLEYEIIPMLEAEVNYDPTPTTSYDFFHQ
Ga0181377_10220822F023484GAGGMNVNTKAGGFLIASLGRYTSKTEKIIFFKTRAGSLVSSYYISTFNSIKEGDGLMLSNSCDPDQVLDADQVAKCKTFIRNHS
Ga0181377_10220824F020110N/AMSTQQEVQARLSYTRAMLERGIRTASVATMVSAKFCVSRSTAYNDIQAAQAEIDLSDDGPSLEEASEPINTDSVLAMLQHRLEVSVATGDDKAVCSLIKAMNQAKQWNGYNTQSVSPFA
Ga0181377_10220825F019754N/AMNHNSDDFMLPWELEPAWPPSEADIQAMFEAGEIDAYDREKALDELIAQELWRESLPSVPTPAELNPNLK
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