Scaffold Ga0181377

Basic Information
Taxon OID	3300017706 Open in IMG/M
Scaffold ID	Ga0181377_1000121 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300017706 Open in IMG/M

Scaffold ID

Ga0181377_1000121 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	30025
Total Scaffold Genes	52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	43 (82.69%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

30025

Total Scaffold Genes

52 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

43 (82.69%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Subarctic Pacific Ocean
Coordinates	Lat. (^o)	-29.499	Long. (^o)	-71.609	Alt. (m)	Depth (m)	12
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Subarctic Pacific Ocean

Coordinates

Lat. (^o)

-29.499

Long. (^o)

-71.609

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042025	Metagenome / Metatranscriptome	159	Y
F069361	Metagenome / Metatranscriptome	124	N
F103922	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181377_100012130	F042025	N/A	MLEPFVEQLPVKLLEQWKCPTPSPNDDLALMEDIMQNGILEPIILGIGVYSRNIRLETGNHRIYLAPRLGMSHLPVVAKLSNYCTFNIGNGDHSFLCPDISVKKEWIQEGYYAKPSEVLDMMSLLIKLKL
Ga0181377_10001214	F069361	GGA	MSPNDFKEARYTESDWFSTFTLGHDDPGVYNWIDDGEKELGCALGYTENSVEYLINNWRYRDKTVPQQGADAAFGCSYTFGYGVNFAWPSMLGVVNIGQNGASNDQIARLAITYCKTFKPEQIYVLWTFKERREHIEENGGLDKFRSLSETAIKEELKNPTWNSNYAMLSNSSADEYNFKKNKMLLTSYCVVNNIKLNQLTIFDLPKSEFPPARDNDHPGEDWHTNIAGIICEA
Ga0181377_10001215	F103922	GAGG	MSAYMKQYVGEYMFDHWLKNHQKLGGFLASSYVDWNILHSPLHDVVHKLEEFRQVPFGAVMDFSDAGITDNSMEYRDIVEDVSKIFYLCEMINYNELIFHPQIIHEPWHKRYRVHPGSGRLMALWLCGYEKIKTIYIHFDEPGFQPPGDCFVIKDRATAQKEFHVNQVLAKKLEVETYSAFPKTEVERIRTHAHDYEWDWSHIHTDKFWQFMRFSEGSSFLEHKNMWRSYAIDAWQDLQHDHIQIGTTSFDFDHTGKVIEVHRNTGSSTTDIII

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181377_1000121

Overview

Ecosystem & Geography

Associated Families

Sequences