| Basic Information | |
|---|---|
| Taxon OID | 3300017705 Open in IMG/M |
| Scaffold ID | Ga0181372_1013458 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - Lowphox_08 viral metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1435 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Subarctic Pacific Ocean | |||||||
| Coordinates | Lat. (o) | -20.1 | Long. (o) | -70.419 | Alt. (m) | Depth (m) | 85 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F066694 | Metagenome | 126 | Y |
| F070308 | Metagenome | 123 | Y |
| F084111 | Metagenome | 112 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181372_10134584 | F084111 | GAG | MRHDWDPNDQQNWEMNCEAERTAKVRPLRDYNGDILNTGDLVWLTDHRPMELAIVLGESHRENVLVRPVKGGYDFTIYEMDCEKVKKNETIL |
| Ga0181372_10134585 | F070308 | GGAGG | LKVGNLVKRRDPSWDTVDQLGLVISMETVEYSPKVAKVKWVGSEDPPFMYKVEDLKVVSE |
| Ga0181372_10134586 | F066694 | N/A | LGIRAGDLVRHNSYKDLLGIVVEVNLNYAGTPVAVAWTGRNPYGFGKNSIHHPDRLEVIREGR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |