NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181372_1006398

Scaffold Ga0181372_1006398


Overview

Basic Information
Taxon OID3300017705 Open in IMG/M
Scaffold IDGa0181372_1006398 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_08 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2235
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-20.1Long. (o)-70.419Alt. (m)Depth (m)85
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018080Metagenome237Y
F052205Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0181372_10063981F052205N/ALDGEPSGITDTQWLIIESNINQTSLTTQMKSDIINRINDLSQLEAEEIITIINNNRYEKDTQKQWLKMFRDGVFEGRDF
Ga0181372_10063982F018080N/AMGYLKVEIFKHFLKTYTYIIWEDKHILGFICEDDIMKLLDKKQLVDFYHFDKTIFKVEKSKIHKYITKDD

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