NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0181371_1050273

Scaffold Ga0181371_1050273


Overview

Basic Information
Taxon OID3300017704 Open in IMG/M
Scaffold IDGa0181371_1050273 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_07 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)678
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-20.1Long. (o)-70.419Alt. (m)Depth (m)160
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004906Metagenome / Metatranscriptome419Y
F099449Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0181371_10502731F004906AGGAGMTTTKKETKKTDARDALDSNEGNELSAIAVKSLTNLEEKVEAIDWKLWEIYNIVKTYVETNPGGGVSAPQVSQPQASAADIAGEIAKALGNTQPEEKKSVVGKLFGK
Ga0181371_10502732F099449N/AANKSLKSNSERYLPYRRNGAYGYLSSEEQYLNLENLMRSEHPEIMTNRNTFNKKVRNEMQGIDKDGLSSTRFRIVNRQNYQEKHEIIEVVI

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.