Scaffold Ga0181374_1009003

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181374_1009003

Scaffold Ga0181374_1009003

Overview

Basic Information
Taxon OID	3300017702 Open in IMG/M
Scaffold ID	Ga0181374_1009003 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_10 viral metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1825
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Subarctic Pacific Ocean
Coordinates	Lat. (^o)	-29.499	Long. (^o)	-71.609	Alt. (m)		Depth (m)	230
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F027812	Metagenome	193	Y
F030289	Metagenome	186	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181374_10090031	F030289	N/A	LQGILKLTPTPEVVAQARDIMQTLPPEAVPLPDERLHVTLAHQSVLRPFRKQLKTMDLPEPPEAILGTEWEEKVDEELGRKSWSVELVNQDDMRAYINQIMELAGGPPDPEPHRRFHISLANLTGNPGDSVR
Ga0181374_10090032	F027812	GGAG	MKPILENWRKFLNEEVQDKYQIFLDMDGVLVDMTQGVVDTINTNLHKVHNGASTDHNDPGSVHPGSKSKSQALRRLVKEMEKEGRTEITAKEFDHMTDLKDSADEGFSGANKQIERYFLSAASRNRDWWKNLPMLPHAQALVDLANEASHDGKAMILSAPIDDDSVSGKQAWVENNLSGVDMGNVVVVPDKGGYLENLNLPDNIIPILIDDRKKYQQQFGAAGGRVIRWNVHNPEGSFDKAAQNLNDIISKKND

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