| Basic Information | |
|---|---|
| Taxon OID | 3300017697 Open in IMG/M |
| Scaffold ID | Ga0180120_10106209 Open in IMG/M |
| Source Dataset Name | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1217 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Chesapeake Bay | |||||||
| Coordinates | Lat. (o) | 37.1043 | Long. (o) | -76.1811 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F035078 | Metagenome | 173 | Y |
| F042574 | Metagenome | 158 | Y |
| F062181 | Metagenome | 131 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0180120_101062091 | F042574 | N/A | KSKFSFFEEQLGLIIAFDIWEESLIDKWHRVKLFCNGEERTICEHDMEVVKRCQENVKSDSNTLQSGSQRVTL |
| Ga0180120_101062095 | F062181 | GGA | MKVGDLVKMKYPRKPQHGGTGVIVENDNTFVSLPNSPNWFRVIWTDSQMSLTGESWLKGQQIEVLNERTSN |
| Ga0180120_101062096 | F035078 | GAGG | MKEQATKLEIFRSHLLDRIKESRVGAIDLNPDGDPTFEVMPELQNYTWVIDLAKRGGVVAIPTSGSAGARLTIT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |