NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182034_10541357

Scaffold Ga0182034_10541357


Overview

Basic Information
Taxon OID3300016371 Open in IMG/M
Scaffold IDGa0182034_10541357 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)976
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F073730Metagenome / Metatranscriptome120Y
F082425Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0182034_105413571F073730AGGAGMRSCRLCLLWISVLMGTMWLLTGCIYNYDAAVERLSPAEQAEFSIYRQIMTGAQTRTYLAKATAAERTAYLSQIGLAQRFQRLDPTDRETVQSGSPRVGMSAEALLFVWGEPVDMAGDAQRYSRWHYMGSSLWRSPNYHPWDASTRVEVYLVNGKVMGWLDTVPSDHGGSDCKPGC
Ga0182034_105413572F082425N/AYRKVMTPSQERAYLAKTTAAERTAYLSEIGLAQRFQALDPSDREAVMGGIPRVGMSAEALLFLWGEPYYTSGDASRYAHWYYLGSSLGLANYGNQYYYSGNRVDVYLVAGQVTGWVDYIPSDVPRRRRLP
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