| Basic Information | |
|---|---|
| Taxon OID | 3300015372 Open in IMG/M |
| Scaffold ID | Ga0132256_100109279 Open in IMG/M |
| Source Dataset Name | Soil combined assembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2708 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR_3 bacterium SM23_42 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Bethesda, Maryland | |||||||
| Coordinates | Lat. (o) | 39.0042816 | Long. (o) | -77.1012173 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003554 | Metagenome / Metatranscriptome | 480 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0132256_1001092794 | F003554 | GGCGG | LLPALGIALAAAFGIGVAAQSQIAGDQAARSVLDKASPLDRDVRVTWQGPVTPSVAGQARALIRGLGLGSSTEVVLMNPVRLGGVVVRPAAIAPLGSWLTGSAVARLGPCRPERCPMLLVGGGPVPSTLTAIGVRIQVAG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |