NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182006_1067048

Scaffold Ga0182006_1067048


Overview

Basic Information
Taxon OID3300015261 Open in IMG/M
Scaffold IDGa0182006_1067048 Open in IMG/M
Source Dataset NameRhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1340
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Sorghum-Associated Microbial Communities From Plants Grown In Nebraska, Usa

Source Dataset Sampling Location
Location NameUSA: Nebraska
CoordinatesLat. (o)41.1591Long. (o)-96.4086Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F088702Metagenome109N
F103966Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0182006_10670481F088702N/AMAYVLLLIFAIILSSQAQAAGVLSTGNCPTGVDFEKSGYIIRFAHVKSPFQYVSALHTAIRNIEAKVADLAGRPYQNREVRKRADELEAVNFLSDVIEQPIRISLVMTSVENCSSGQLDLLYTVLTTQLAPVLSRTFESYQLEKFAPERTAGIDAEINRWRFSPSIAYDRSEQLSGGARLEYRSGNPLSNYLPFGSLMIDGRASARMHDFSAALSGSVVRVAEWLEWAEWQLNYLNTSNPTDQSSLRQNRFAAQSSAMTRPLGSVQLPLRFGGQLEGGTLRSHFASSELAHNTVDGSGYGSVKFYLGTTARLDRNVFALSYGLEVGST
Ga0182006_10670482F103966N/AVKFELNSKNGLRRVIFGLEKNSQGDDILWKINFALFERDKKSDPYSDALVDMDVEVDTQLNKKAEDTAHKGLTPGQAAHALGPAAEDAKAAAAGEIDHEEASDTVQATLRKK*
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