NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0172382_10012034

Scaffold Ga0172382_10012034


Overview

Basic Information
Taxon OID3300015214 Open in IMG/M
Scaffold IDGa0172382_10012034 Open in IMG/M
Source Dataset NameLeachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 138R metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11347
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (88.89%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)43.442Long. (o)-80.577Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029451Metagenome / Metatranscriptome188N
F040648Metagenome / Metatranscriptome161Y
F054066Metagenome / Metatranscriptome140N
F054970Metagenome / Metatranscriptome139Y
F079824Metagenome / Metatranscriptome115N
F101228Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0172382_1001203411F054066AGGMFRTTRKAKELNRFRVGKGSPGLKAVLYRMLNKPYLDIRIYRGYREVTRIVTPDKGMRRFVVDGVGAFVMPNEEQMLRQLHDRYALYINYNINSSTPGQVTEELEPIAFKYPPLSPAEFQTELEAQTVADLLAETEKDNSWIWLLAGGAVLIFIMILIFGGA*
Ga0172382_1001203412F029451N/AVPEMAVDLEDLIASTSSNAGQPSIIEALLSTVDSIFTNNRMLQRSRLSARNIRGVVRVIGSQAFLRARLERSYKPFLDPDTGEFTYGRYDNRVLTAICEGALSGRISLDGKSRDEIIRIFQAVGNTAQEESVGRGGGILGRFDY*
Ga0172382_1001203413F079824GGAGGMIYGFFGSIPGCPHSRGNHALRGNGKTLCLTFVGYVDALRGRRVISNYKTSFSEYVPVDEIARMVVEENIRDTTILITEMQVYLNSLGVNSNDLKEFIGSVVGQSRKRNTDIHYDTQRYGDIHPRLRVQTDRAFIPRKFHVDGGPCHKDRCKEKHIIYLFQHDPFLQKEVIRLNAEAFADLYNTDEIIAVPKRKSKRRKT*
Ga0172382_1001203418F054970GAGGMVKNTPEGLQKIDENLILDLYKNHECDNWKCEECPFHLKEVEEDPYYGKHTCGWLLLRSATRKIMRK*
Ga0172382_100120345F040648N/AMTENVMQILEVRHDIDVLLETARAGVTALETASTKIHIPTREMAKIQTAMRKMREAANYVENRAHNLSVKPDKITKTALKEALKDASQEQIERAYTILSGLDAAYETPEEDLDEGGAMTDKEAHYFIQVKGDDE*
Ga0172382_100120349F101228GAGMVRDIWKWSAERWLYFTVIGIVYLLIYYASGSPIQAAFGILLLICMWLGILWVDRLPRDDQIFWKRLVGITVILLAITVAITFNPVSALTITGEPAGDQIHWEIADGEPPYTVFVNGVEIVSGYPGTVFTTDSEPGRQYTAVVLDNETVADATVTGEYYTYPMWVWLLFAALIGCLIVSIWLPYAAFGAAIAGGFLLLLIAPNPDYAPYLRIFAGAAFIVGLAGIAGRLQ*
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