Scaffold Ga0167650_1000756

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0167650_1000756

Scaffold Ga0167650_1000756

Overview

Basic Information
Taxon OID	3300015203 Open in IMG/M
Scaffold ID	Ga0167650_1000756 Open in IMG/M
Source Dataset Name	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-3c, vegetated patch on medial moraine)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Bristol
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9528
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (92.86%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Afifellaceae → Afifella → Afifella pfennigii	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location Name	Storglaci?ren, Tarfala, Sweden
Coordinates	Lat. (^o)	67.900853	Long. (^o)	18.44175	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F084397	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167650_100075611	F084397	GAGG	MVNIVNAGQLGGGYRHYSGLLPLTPGDGGPQAQASVRVFHIPAANAAAIFRGDIVVMASGSIGTPGAADLPYNIGPPSSTSVVIGNGGGTLLGNASMTANISRWVPGDTTSVIAGVVVGWGPITLYQAKNGFQYAPASTECWAFVETDSLVEMSCTMPTVPGTAFNLDLQSGIDLKANAGQQSTRFGISGVSLDPATIATTSTLPLRILDSGQQIGNDPTAAGFVARVQFNQSRHYKGGAGFVAD*

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