| Basic Information | |
|---|---|
| Taxon OID | 3300015202 Open in IMG/M |
| Scaffold ID | Ga0167663_1000713 Open in IMG/M |
| Source Dataset Name | Arctic sediment microbial communities from supraglacial cryoconite, Storglaci?ren, Tarfala, Sweden (Sample st-12a, ablation zone cryoconite) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Bristol |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 25963 |
| Total Scaffold Genes | 28 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (53.57%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Storglaci?ren, Tarfala, Sweden | |||||||
| Coordinates | Lat. (o) | 67.901457 | Long. (o) | 18.580979 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F075133 | Metagenome / Metatranscriptome | 119 | Y |
| F083833 | Metagenome | 112 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0167663_100071326 | F075133 | GGA | MTNTVDTQIADQLERIIRRVKQSMNYRGSYSTRDILGSLVARWVHSGEWERLKELPAEQRKLGESVRRFILDRFDQLRRRGHREEIDREQIAIPDEQTLGELVALAELRQWVIARIAELEQEIMDPRVRIPLSRPAQVGTILRLYHAGKTQREIATELALSLGVVNKRIVEGTNYLVLIQSIEAGLTT* |
| Ga0167663_100071328 | F083833 | N/A | DDVVKETAAYLVGALRGDAEVGKAVSDVLASRKAKVLTALLKGLETDDETHAQRILQLIGALPDACEILCDAIESPAENVQVNAAVGIGLLGTKKAGSDGRKALETRRTGGFLRTREAAFKGLALLKELP* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |