| Basic Information | |
|---|---|
| Taxon OID | 3300015195 Open in IMG/M |
| Scaffold ID | Ga0167658_1000011 Open in IMG/M |
| Source Dataset Name | Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-6c, vegetation/snow interface) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Bristol |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 163672 |
| Total Scaffold Genes | 189 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 151 (79.89%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (70.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Storglaci?ren, Tarfala, Sweden | |||||||
| Coordinates | Lat. (o) | 67.865505 | Long. (o) | 16.714941 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000586 | Metagenome / Metatranscriptome | 1007 | Y |
| F001473 | Metagenome / Metatranscriptome | 688 | Y |
| F001949 | Metagenome / Metatranscriptome | 613 | Y |
| F003175 | Metagenome / Metatranscriptome | 503 | N |
| F004392 | Metagenome / Metatranscriptome | 440 | N |
| F008206 | Metagenome / Metatranscriptome | 337 | N |
| F008922 | Metagenome / Metatranscriptome | 326 | Y |
| F009767 | Metagenome / Metatranscriptome | 313 | N |
| F020609 | Metagenome / Metatranscriptome | 223 | Y |
| F069868 | Metagenome / Metatranscriptome | 123 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0167658_1000011119 | F001949 | AGGGGG | VSYFNFEFNSKMATSLVHTLNRPYKGAQKFSATAPDAQGTLVIWARDPEECREHLLNALFDLIFARNRVGAALFNPPCIFCGGKTQSRGRNSSGTRGWRCMNPTCQRSFVIDRSFRGGINHPTQSKKPDFHRLVFIDGKTIREACDALGISMSAGDNWYQKMLTVRKRIDHKCPCGKELRHRGSCRFRQEYLMPKDKAPDENRTADCRKVGSERTGKAPAG* |
| Ga0167658_1000011136 | F000586 | N/A | MAPDIIQADMNHADPNTMRARARQATEILKTQLLGTGAIEPLVALYFDDHIEQVEFQDPSVLEHFDVRTARSFDYLRTLVRIKNPQAAMITLDVQMGPFESDERDVLADTTAVFLMLDSPLLTIQVLLPYRRCGGRTAVSNVHYTEMPGAEGDAPCQLFKVFSDVPLSVC* |
| Ga0167658_1000011140 | F020609 | N/A | LQQAAGLGFRAETLGFDLLIAQLVRDRILEPIVSSPFHFQIRRWNWTNPESVYAADDRLSLIAISREEQTARFRMVGLLSARISNPRLPEKRVQQIRKERDELERIYEATWLELENAIGSNAAEAIRKSVEETTEACAVQLELPLEKKRNFDLEGEAKCNQ* |
| Ga0167658_1000011144 | F003175 | GGAGG | MNRIELSGKSQGKGRNGYFQLHSVELINIPTDPDGQVLNIDFYPRRRVNCVGPARLLLNVEDATKLAQFLGEAVESRPPVASIEHGVLVCECGHRGTPRLEESGYQVSHTLVEIVGDTIIASGWDGSSRAVSEEGDAYWLMCNGCGKLHPLPPELHIDWR* |
| Ga0167658_1000011145 | F008922 | AGGTGG | MTTKQRLACGTAILRSIDARRQRTGNRNELLALEQAIVDRELIELVTGELCDEKRKLAGDRVRKRNVPAATRATGALDEKDLRRANR* |
| Ga0167658_1000011150 | F069868 | N/A | MTPSLAGNLRTPNPADMRQQREQHADYDQLNAASARDASRRRE* |
| Ga0167658_1000011161 | F009767 | AGGAGG | MRTLYYVNAGSGWFGFYLDEGALALANDGARFNSFGAVLAWAGEHDFEFVAKCEPEGSARVATEMRRNGGRI* |
| Ga0167658_1000011169 | F001473 | GAG | MESEYQTVGQMYERLRLMIRQRNDTGFRFAMTDAVLEPRNPFEPASKRRPKSVVAITLILVLVLALIFLYFSFHHAR* |
| Ga0167658_1000011173 | F004392 | AGGA | MPVNGPETIADSKPSQPVPSEGRSVRAARNAKPAVGRGASTRRRRDQQDSSETNGEERFFLASANRNGDVPTLGRECATEAEAIIEAFREKVNLYKVTEFQTRADIGRSGEPILRKETLKKNNPAS* |
| Ga0167658_1000011185 | F008206 | AGGAG | MSSWPFLFAAALAIWLLLKGPAAKTPLFVQIVCRIAIVFFAYCGVLYLLKWDPFWKWMLSTGLMNRNTAEGFLILVSTIVWLIATFRIAFRGLRFRALGARSVGPESRVARQETNPPSLSLKNIAIFHYFFYFFSRK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |