NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0167637_1044944

Scaffold Ga0167637_1044944


Overview

Basic Information
Taxon OID3300015087 Open in IMG/M
Scaffold IDGa0167637_1044944 Open in IMG/M
Source Dataset NameArctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G6A, Proglacial plain, adjacent to northern proglacial tributary)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Bristol
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)589
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location NameRussell glacier, Kangerlussuaq, Greenland
CoordinatesLat. (o)67.155592Long. (o)-50.08499Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025349Metagenome202Y
F097466Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0167637_10449441F097466GGCGGVTEPLTRSLTISEELVRAYSRRGNYHSDPAMSADLQLPGLVAQGVQAAGPAYGALLDAWGEE
Ga0167637_10449442F025349N/AGPFSELAPGTALGPLRLTVSAAANERYWRAAGVDHPTLAAGALYPPIAANLTVLCFAGVFAEAVIQTRQYLRCHRRVAAGVELVTTGRVARRYEKRGRSYVDVETTIVTADAPDDPIWTSEVSFTPAATLAAGP*

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