NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181338_1000845

Scaffold Ga0181338_1000845


Overview

Basic Information
Taxon OID3300015050 Open in IMG/M
Scaffold IDGa0181338_1000845 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Sp13.VD.MM110.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5774
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001739Metagenome643Y
F008879Metagenome / Metatranscriptome326Y
F009260Metagenome / Metatranscriptome320Y

Sequences

Protein IDFamilyRBSSequence
Ga0181338_10008451F009260N/APTKVANVIVGEEPAKETMRKANVVVANTRSQDYPPMKTSGIVVRGGKAQTKGKLARGPMA
Ga0181338_10008455F008879AGGMATTFKKGDVVKAVAVIPQGPVLALRMSEDGVVSYLIEWTDTDGETQHRWFEEYLLTGA*
Ga0181338_10008457F001739AGGAGMTTFTTRITAMYTLQQPDPNYVVNALWEVTGVDGEYTAKIGGNTTFDSSQAPETFIPYDQLTQAIVIGWIPENAMASAQACVQGQIDSMITP
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