Scaffold Ga0134293_1007822

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0134293_1007822

Scaffold Ga0134293_1007822

Overview

Basic Information
Taxon OID	3300014973 Open in IMG/M
Scaffold ID	Ga0134293_1007822 Open in IMG/M
Source Dataset Name	Marine microbial communities to study oil droplet degradation from Trondheimsfjord, Norway - 0116 : 2 days incubation
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Battelle Memorial Institute, Gulf Coast Restoration Organization
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1761
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Microbial Communities To Study Oil Droplet Degradation From Trondheimsfjord, Norway

Source Dataset Sampling Location
Location Name	Norway: Trondheimsfjord
Coordinates	Lat. (^o)	63.43	Long. (^o)	10.43	Alt. (m)		Depth (m)	90
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014072	Metagenome	266	Y
F098070	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0134293_10078221	F098070	N/A	MKITKAKLKQIISEELSSMSEYGGIYEDEPEMADPVVSVIVKVEELRELVMNGDPGGEGALAAIDEIHDMLKGMQTGAGNEVAMAMSS*
Ga0134293_10078222	F014072	GAG	MKLLLERWNKYLNEDLNTATRLSVFDFDETLAFSEGKIDILDQTGNIVDTISIKDHDKWEDDERIKSGELKFDYSELDVITNPTEIVAVTDIMRDRTADGSTQVMVVTARTSRTSDDIHRYLDAIGVPTDDLYIKGMGDEGLGRGKGGFIFSVLEEFPDIRKVEFYDDSPKNITDVNTAKAQALEQGMVDVFDVYLVVDGVPQKA*

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