| Basic Information | |
|---|---|
| Taxon OID | 3300014962 Open in IMG/M |
| Scaffold ID | Ga0134315_1001104 Open in IMG/M |
| Source Dataset Name | Surface water microbial communities from Bangladesh - BaraHaldiaSW0309 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Tennessee |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5209 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (92.86%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Surface Water → Surface And Well Water Microbial Communities From Bara Haldia, Bangladesh |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Bangladesh: Bara Haldia, Matlab upazilla | |||||||
| Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000325 | Metagenome / Metatranscriptome | 1296 | Y |
| F057320 | Metagenome / Metatranscriptome | 136 | Y |
| F086678 | Metagenome / Metatranscriptome | 110 | Y |
| F104766 | Metagenome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0134315_100110411 | F104766 | GAGG | MEWISFFEKQPENGQGIWYYGSVIGVWCGEYMYSPDDPVSPHIIHCHESFGVVDRMDAPWWMPDDGVMVRPQRPDQPYPKDYPNYGA* |
| Ga0134315_10011043 | F000325 | AGGAG | MKTADGNDKLGKGCIVVSRPVGDTCPPDCDYLDNGCYAEQTEKQYKNARVAGFANVVTEKNKIRAMILDAKRREKSIRWHERGDWFLNGELDLDYVANVTWACESILADGDTLPDMWFYTHIYDCRLVSLEKYMNVYASVHDDNDMGEALAQGFKKFAWCDSDMKIAPKRPKNKAKADAWRAALPKLVVLNGTKFVTCPEIRRGRATITCTGTKDSIACDLCVRGLGNVLFPAH* |
| Ga0134315_10011044 | F057320 | GGA | MSYVGLYDDAGSKNAFYIIKDRKIGRKRIGFKEFENKQEAEFAHRVQKHLSQFDLAPMVYGDVGMIRRHDGELTAYGYLTEVAKPMPGCYDDEYCDGECFESECSNGTTISEVVCDLDEHGLTYADAHRGNFGFVRRKGQWVPVVIDVGIESFSDWDEDIYGNFEYDGDDCGCDCYDCVKARGAI* |
| Ga0134315_10011045 | F086678 | AGGAG | MAKYYIKCGTLELIYSCNKCPRDAAMDAIWETNDNDVLDEHIYLDERGYRDYTSADGHTTVLHTSHILKDAGWSIE* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |