| Basic Information | |
|---|---|
| Taxon OID | 3300014962 Open in IMG/M |
| Scaffold ID | Ga0134315_1000099 Open in IMG/M |
| Source Dataset Name | Surface water microbial communities from Bangladesh - BaraHaldiaSW0309 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Tennessee |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 25560 |
| Total Scaffold Genes | 39 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 32 (82.05%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Surface Water → Surface And Well Water Microbial Communities From Bara Haldia, Bangladesh |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Bangladesh: Bara Haldia, Matlab upazilla | |||||||
| Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F013252 | Metagenome | 273 | Y |
| F017424 | Metagenome / Metatranscriptome | 241 | Y |
| F035623 | Metagenome | 171 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0134315_100009915 | F035623 | AGTAGG | MSEYVYQIQGALENAQGQLKGLRVLVCDAYNMDIVDAPIEILDNETARFLQFRLKVSKQAVNIQNLPFSVQNKIRMPLGRWLDQWVRENFHGDTSKRKSINT* |
| Ga0134315_100009919 | F013252 | AGGAG | MANDNNLKGFRQVYQETGHLSSGGGPGEKNLDAGPSGSKRPNNAVKGKPARSSKVGPGKNLKDIGGGNFY* |
| Ga0134315_100009920 | F017424 | N/A | MKDFISEIIGRVKTERSNLADNVTAGMNVNTFEDYQRLVGRYEGFTIVLDIIESILTEDDEEV* |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |