NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134316_1002899

Scaffold Ga0134316_1002899


Overview

Basic Information
Taxon OID3300014960 Open in IMG/M
Scaffold IDGa0134316_1002899 Open in IMG/M
Source Dataset NameSurface water microbial communities from Bangladesh - BaraHaldiaSW0709
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Tennessee
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1782
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Surface Water → Surface And Well Water Microbial Communities From Bara Haldia, Bangladesh

Source Dataset Sampling Location
Location NameBangladesh: Bara Haldia, Matlab upazilla
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001059Metagenome / Metatranscriptome790Y
F006264Metagenome / Metatranscriptome377Y
F040590Metagenome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0134316_10028992F040590N/AMSYGKVISGGKQMTKGVTKGINDKLASFADGHSRAASLAGAVRKAFTQNPLSDNHTNNVNGHKFTTPKLPKNV*
Ga0134316_10028994F001059AGGAMATYDIDALKADLPTAKELAQFVYDRTGVALDLIGKPKEEQYHAARNVLEGKKVPDSFVTDENPYVEKKDLIPEEPLGPMPGRHKDCPPEENQVHYFGATNMPHPHDPQSDRKVAIDFRKYDNGTITYKIVGPVEKIAVGSRINKYGQNVPEKYDWIDPRTEEQVLRRPDGTFTKEGRGLHTYCVGEKGAGIWTLIDREQVSISQKNIADPWA*
Ga0134316_10028995F006264N/AVAEPHLIFREKLPDQAEACARKTLEWLQKDLQSTHDLAPDEVYYLASAAQILLMIRDTYGKK*
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