NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119954_1000185

Scaffold Ga0119954_1000185


Overview

Basic Information
Taxon OID3300014819 Open in IMG/M
Scaffold IDGa0119954_1000185 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22120
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (72.73%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.21Long. (o)-83.96Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000368Metagenome / Metatranscriptome1223Y
F004430Metagenome / Metatranscriptome438Y
F043817Metagenome155Y
F051089Metagenome / Metatranscriptome144Y
F099159Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0119954_100018510F043817AGGAGVVIEKYENLVAHLGYEFARKFRMLDVDDIRQELWVWFLEHPNKVKAWEKLDDKQSVKLIARSLRNAAKDYCQREKAKIAGYRVEDNYYYDKNVLELLLPAVLRGDSTAPALNDIGFIANKKVASEGNNWFAMVADIEKALDKISEEQYIVIYHRFGDGADNSTLALELEISEDAARMRVNRAINSLLNILGGSRPRKERDYKEDEDGTDSIERDAGDLGEQVEGPELD*
Ga0119954_100018522F000368AGGMEQFKQVSLTWFRASAAAAVALYLAGETNLKVLATAALAGFLGPVLKWLDPSAPEFGRGAK*
Ga0119954_100018531F004430AGGMATGAEVLRMLIPNGGYVLTGDDYEGLQFLECEPITKEQFEAGFAQYDAWKAEQDSAKAAQKADLLDRLGLTEEEAKLLLS*
Ga0119954_100018535F051089AGGMATGVAGSSFTSELNRLGNSGTYPVLTLYLAATGAANQYAGTTGKALIGALNLEADATRQPSDFKALGGICNELAGTTNLSPTDALRSIDV*
Ga0119954_100018540F099159AGAAGGMNAKKVRKAGGIDSANAKAHVADLYRNTRSIKYKPNTKLGGREMDPTKVPGFKFGAGTE*
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Bioinformatics & Integrated Biology Lab
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