NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134311_100867

Scaffold Ga0134311_100867


Overview

Basic Information
Taxon OID3300014686 Open in IMG/M
Scaffold IDGa0134311_100867 Open in IMG/M
Source Dataset NameWell water microbial communities from Bangladesh - BaraHaldiaGW0309
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Tennessee
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2024
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Well Water → Surface And Well Water Microbial Communities From Bara Haldia, Bangladesh

Source Dataset Sampling Location
Location NameBangladesh: Bara Haldia, Matlab upazilla
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)10 to 30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060598Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0134311_1008671F060598N/ALLTAIFSVVFGIQRAFHLDEVCDLGFALATGRPRSLSHSTFQHILRAIPEQAAQTFYKRSAKGEVKRLEPGPRRISVDGHNLPRYTALVDLEKGKIGNTGRILKAEELVWAYDLDAHLWLAMRAFHGTNKLSQSLVEIVREVLKYRGPNQDQLRLFFDKGGSCGHVFRDLLPLPAVRFYTFAKRTEENVAEWEQLPAKAFEQKRFSFDKHADLPADQRPCYRLADTAMTLKVWDAAQHQIVDTVTLRAIVLHDAQAQKLAERWPVTLLTNDRTRDARVLLNEQGDHWGQEFAHRIGRHDLQSDILPTGYVLTTTRDEHGELQREVEFDNPAFFLSAWLHCLVFNLMTRFAQALGGESVHLWAGTLLRKFIRRPATLYLIEKELHVVFDPFPGQDELQPLLDKLNAKQVALPWLNHLVVQLSIAQDAPVYPLTEPEKRNRLFGDG*
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