NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181525_10005890

Scaffold Ga0181525_10005890


Overview

Basic Information
Taxon OID3300014654 Open in IMG/M
Scaffold IDGa0181525_10005890 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9008
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).1 to .2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021905Metagenome / Metatranscriptome216N
F049989Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0181525_1000589012F021905AGGAMALLEAAVEAVELDAFAKEIPDLIFHGTTAYSLFKAEATKIPVSNQSNAGGTQRASFRVPFRVQAGAGISQGTGNADSMLRGSGSQWASFALAPVYLFNVCEISWLAQASTDSKQKGLFAVKAQEMKNSLDAAMQGIEGLINSDGSGMIDQIPATAVIVLAGGTPAAQTASITPVNIAVAFTDQQVVKFYSVAGVQRVGGATTATISYSDGPSNTLFFSTALPTDVVATDYIVVNGASYGAGNSILGIKAWDVNSNTGTIGGLNRNAYPGRLSTPTINLGGAALTPGIAQRAEVLLGRALGPDADSIKSGIWYGPPEQAFAQSNLMYNVQIVNAQELKGDKTLDMSKKYFSDTFGGRKYHKSWTATPSRMDLLVMENWYIGELSPLELYDFGK*
Ga0181525_100058905F049989GGAGGMPDPTAQYQQFQAPEWFSDELKRIGGENPYGDANFIVRWGQGGQDECLYRAGGHWDVPGLPSYHGYRNLLVGGGTPSWMLMQWQPAVNFGTPESFYVAGLDEESGLQTLGEYAYSGKYVLLYNMCWRDMQNGKMYVESMPLNSQILDLIVPIIVQAKDISFEKTKAALKEMKEKDDAADLAIIEDAMRDAALAFKGPTSYARQGCRTWHIDKKMEQMTRQWNKMITNARSLGRGLSAHSENPTI*
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