NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181525_10000501

Scaffold Ga0181525_10000501


Overview

Basic Information
Taxon OID3300014654 Open in IMG/M
Scaffold IDGa0181525_10000501 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34221
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (63.64%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).1 to .2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000109Metagenome / Metatranscriptome2202Y
F014937Metagenome258Y
F102323Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0181525_1000050115F102323AGAAGGMKRILFVTGGAGGVGLETLQHQGTLRKSNGGSCDVLNSSLMRAVMMFLPTDKLHNILLANRTDVIPVENSIIVQGISGKSQTVGSRRAKFPRLVWRQIRQRLCSVDLVNRAKFKFNSTNEGIVCRERF*
Ga0181525_1000050116F014937N/AMMGAVIRTLLPLLLELRRKGYSLTMLTHLLAEKGIKISPTALSGYIAKFNGPIEEASVRARRERPQTSTSASQTRGTFVMKSDVTL*
Ga0181525_1000050119F000109AGGAGMPTAKKLTTRPKRRVVSPAETRTQLRLTVDSKFTKSHFSQLFAVLKIRRKNALAEHIIMSFKSKAAQAQLVAFYNNQWLNIPFQSIDTAFVFPLTFEIADELERVGGEVLGGVNRSKAFRVMVAYFAFVHKLKTPVQSTFA*
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