Scaffold Ga0181536

Basic Information
Taxon OID	3300014638 Open in IMG/M
Scaffold ID	Ga0181536_10017956 Open in IMG/M
Source Dataset Name	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014638 Open in IMG/M

Scaffold ID

Ga0181536_10017956 Open in IMG/M

Source Dataset Name

Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5923
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

5923

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	47.1149	Long. (^o)	-88.5476	Alt. (m)	Depth (m)	.6 to .7
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

47.1149

Long. (^o)

-88.5476

Alt. (m)

Depth (m)

.6 to .7

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F046997	Metagenome	150	N
F050262	Metagenome / Metatranscriptome	145	N
F055381	Metagenome	138	N
F058854	Metagenome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181536_100179562	F046997	N/A	VTVADVRTERDSIPRSLAREKAEALAIFRASRQPLLWQRAMSGISRIENKLQSTPTNAAAETSALLLTLGDKKLTLQAGVLKKSYTACRPVNGLPLYVDRNRRRAPETYLDPEILKGGVNILTLKGTNQIPACLSGEELEDYLQLRCDQKLQTGDYWRELHARKLDDEQLARLRYYDYLDAHVALRSVPVYQCTEIRSRNH*
Ga0181536_100179563	F058854	N/A	LNARWQGSAWQANRLELSGLTCQGALFPLITQGPGAFSLPSGALVLRLHVLPLNTRDSEPILVLWGRIADPQDKPLARLFLRKGRLVWVCPIDAKGDSLFDAPKDVELATRELTPGLWATVDVLVNPLAYQQTFGWNLEMNHPQDPAKPSGRTPHLARQLTAADWTLQKIEMPRLHAAWLGQMELLPADTRPAQLRPNILRR*
Ga0181536_100179564	F055381	N/A	MKIFLQLLFILPALAAAGSSLRDVYLPPWCDREAFQIFELEINDLPVNCVQLDHPCTLFCTNQVVVVSNGIARARLLIDLKKTPATFPIIVLAPDANGRMTPRQRLICHLSLVPLPIQVEVRGDTFTVTNLTAEPFELEHAEAVNITSQDDRHIAGTLNGSGRLKLKGRAEIRLNRKPGPGGPG*
Ga0181536_100179566	F050262	N/A	MKITFHRRQRTSGATLVEMVAAIIILGLVVTGVAQFLLVSKINVYTDNVKTGVLQALSDTMVKYQPMSVGETNVPVSEDLLPHIPSGTMRLEKSGPANGVYTLQGSVTWRAFPHGDDSFLFHEQLTLEVPE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181536_10017956

Overview

Ecosystem & Geography

Associated Families

Sequences