| Basic Information | |
|---|---|
| Taxon OID | 3300014502 Open in IMG/M |
| Scaffold ID | Ga0182021_10003706 Open in IMG/M |
| Source Dataset Name | Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 17971 |
| Total Scaffold Genes | 23 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (65.22%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Sweden: Stordalen | |||||||
| Coordinates | Lat. (o) | 68.35 | Long. (o) | 19.05 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002448 | Metagenome / Metatranscriptome | 558 | Y |
| F007212 | Metagenome / Metatranscriptome | 355 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0182021_1000370615 | F007212 | N/A | MSDWPTIDAAANAVMQQAFGEPVVYQSVQAGVAVGDPVTITAIRHARVREESGALANIEEISVSASALASFPQRGDWVTAWGSQFVVTTVRQPDPYGLVELSLTARAGQNPDD* |
| Ga0182021_1000370616 | F002448 | N/A | MILAEWVTALQALPNLVDALGGDGSYIQFYTENATVFGQPTQNNIRLAILSMPPGSIMIAWQGTGPGRLGNALVFVHEFSLYLRAPEEADVGYEDLFNWIVNDVPAGSSLRMLHTAVDPNCEPMDFYLPSARRNTVVISPDGATFEYFEVPVRLIESYNP* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |