NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182024_10124864

Scaffold Ga0182024_10124864


Overview

Basic Information
Taxon OID3300014501 Open in IMG/M
Scaffold IDGa0182024_10124864 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3672
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008143Metagenome / Metatranscriptome338Y
F019446Metagenome / Metatranscriptome229Y

Sequences

Protein IDFamilyRBSSequence
Ga0182024_101248643F008143GGAGGMKSVSGIHRTRLAASKVHRHLVKEARRTVQKLGWQVPENDMSPTLVGAIPLPFPVPDSFETAFGYKGNLRFVQFGYTAGSPQFGYSDGGDDLPSDGSLWSWFLHHPAVAQCLPESRYPTLYGKFPSGTERPPLEQIMRRGAELPTCHCLLLDRRDRRAYVSKRDQAMILFALMEPDDGDAHNVFVDGMLMSPGSEDYKVGPPPGVLDEFRRFMDSRVQAFEGA*
Ga0182024_101248644F019446GAGMPGEIKEVLRWHADAQSRGHASQSIADFAGRFLGGMYEDGAVLPTNLSASAPEVLALVLLQHRTNPRSTGAWLNLGFALRRVALYRTQDPEETNRARLQSAIEVFDRALQLDRDNTGKNIRAWTGMSFAYHMLGIYEKELEYRAKALESDRSDPKLWLGYSFALKSAGRDDEALSTMNDAYDAYMRAGSPEELREVFADVQSAIQRPCRGRMAQ*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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