| Basic Information | |
|---|---|
| Taxon OID | 3300014501 Open in IMG/M |
| Scaffold ID | Ga0182024_10015908 Open in IMG/M |
| Source Dataset Name | Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 14335 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (88.89%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → Synechococcus → unclassified Synechococcus → Synechococcus sp. JA-2-3B'a(2-13) | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Sweden: Stordalen | |||||||
| Coordinates | Lat. (o) | 68.35 | Long. (o) | 19.05 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F047521 | Metagenome / Metatranscriptome | 149 | Y |
| F062585 | Metagenome / Metatranscriptome | 130 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0182024_100159086 | F062585 | GGA | MVKIDSVSLVLNVRRDGKQRALCEGLVVPWQQLADGAAAFAEWHMIILWVRAITEAADHVPQVVRFALQSRCPGFLELQSREQKDSLPIWKSLEEWVTAHRFARARAEGWFDALMYYAYKDLRIEQAWTTWERTKADWRHTAPVRWPTLEQWTLEVLATRSLALPGTEKARAVQALGTVEAPRLNRAVTESLETRALALWVDAVSKPRQPLDGDVATELRNRCPGLLPASDVGPQWVRSLFYRLVRFGESTWRCTARSEGWYAALHYAVVHHPRYQRLIHYNQRCHDEWFQVRPKSYPSFADWLASADAYCAGRRT* |
| Ga0182024_100159088 | F047521 | GGGGG | MVTIPYDYDEKSAGSVVPICIDDIDSEGDLIHPALIELGVVPVADLLRNIAGRVLNDRWRVSEITELAVHSLWRTDRENFGAAPSFRILRRAHSFAEDLRVGGRRARKKADVELFATTLEALQDQFDLTAALEAKDTLDRLMDQLRRLGMDDVREMVPMILSDCAGEELVGRFGKSRNTISQRFYRGMRKAAAAAGIRR* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |