NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182024_10000505

Scaffold Ga0182024_10000505


Overview

Basic Information
Taxon OID3300014501 Open in IMG/M
Scaffold IDGa0182024_10000505 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)100432
Total Scaffold Genes86 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)55 (63.95%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002165Metagenome / Metatranscriptome588Y
F006799Metagenome / Metatranscriptome364Y
F012912Metagenome / Metatranscriptome276Y
F029529Metagenome / Metatranscriptome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0182024_1000050512F006799AGGAGMHLALQNAETISRLVDQGEFLLKSFHNEHQKDPDGVETEFARGELIGWRSTLHTLFRDCAEDIVNRVIVRTHLIIPSGEVPVGVAHGY*
Ga0182024_100005053F002165GGAMSDKVDPLQEILSRQQLELDRMKEALALLGVGPCSWCKRFFRRTDPGALLDAGEPVCYGCIHEWWPTHCAQLGAKDREIEEAKLVFWLRQFHHAETFKDPAKLPESSLQELSIVANCLECRGTGTLMEQERCRHCEGRGTVWIIVSRKQLHS*
Ga0182024_1000050559F029529AGGMNVLFLLFVIAILLVLIFWELSKINSRLKKTLVPLPDAAKDKPRN*
Ga0182024_100005057F012912N/AMELLLNLAWLALALPAFWLWRGSRTASRRRTFTALQCLLALGCMLVVLFPVVSATDDLRAIRSEMEESPASKRTIRQTTSDKTSAWKWQTPPAQTVAANFSIISDQSGLPLPGPVFSLPAAPSIQWAARAPPPSFPG*
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